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How to get from Houston to San Juan

No nonstop flights. The fastest way is via Tampa: about 8h 5m including the connection. Other options: via Miami, Atlanta, Austin and Raleigh. Two tickets from $88.

Flights from Houston to San Juan

Pick a departure date to see flights and seller prices

We search agencies and airlines for your day: nonstop and connecting flights, baggage, departure and arrival times.

Prices by day: Houston to San Juan

Lowest one-way price in dollars from recent searches, cheap days in green. Press a day to see flights and exact prices.

Filters

Best fares from Houston to San Juan

Lowest one-way prices found by recent searches for the next 120 days; press a card to search that date

Cheapest one-way $139 18 November 2026, with a connection Cheapest nonstop $358 13 November 2026, UA Cheapest in the next 7 days $165 13 November, Fri Cheapest weekend departure $165 Fri, 13 November 2026 Cheapest month November 2026 tickets from $123

Where to connect

Options with one connection, fastest first

fastest, via Tampa
8h 5m
two tickets, via Miami
$88
connection options
5
straight-line distance
1,997 mi (3,214 km)
fastest
Via Tampa
8h 5m
with the connection
Houston to Tampa flight 2h 10m
Connection of about 3h
Tampa to San Juan flight 2h 55m
two ticketsfrom $385
Via Miami
8h 9m
with the connection
Houston to Miami flight 2h 33m
Connection of about 3h Arrival: Fort Lauderdale-Hollywood International, Miami International. Departure to San Juan: Fort Lauderdale-Hollywood International, Miami International.
Miami to San Juan flight 2h 36m
two ticketsfrom $88
Via Atlanta
8h 30m
with the connection
Houston to Atlanta flight 2h
Connection of about 3h
Atlanta to San Juan flight 3h 30m
two ticketsfrom $138
Via Austin
8h 30m
with the connection
Houston to Austin flight 1h
Connection of about 3h
Austin to San Juan flight 4h 30m
Via Raleigh
9h 5m
with the connection
Houston to Raleigh flight 2h 40m
Connection of about 3h
Raleigh to San Juan flight 3h 25m
two ticketsfrom $377

One ticket or two

How the options are calculated and what to keep in mind at the connection

Flight times come from the nonstop schedule (estimated from the distance where there is no schedule), with 3h allowed for the connection. The price of an option is the sum of the lowest known fares for each leg; their dates may not match, so treat it as a guide. The search shows tickets for your dates, including connections on a single ticket.

Nearest nonstop flights

The closest you can get without a connection

Frequently asked questions

Is there a nonstop flight from Houston to San Juan?
There are no nonstop flights in the schedule. You will need a connection, the fastest is via Tampa.
What is the fastest way to fly from Houston to San Juan?
Via Tampa: 2h 10m to the connection, 2h 55m after it, about 8h 5m in total with 3h for the connection.
How much does a flight from Houston to San Juan with a connection cost?
Two nonstop tickets via Miami from $88. This is the sum of the lowest known prices for each leg, and their dates may not match.
Which cities can you connect in between Houston and San Juan?
Tampa (8h 5m total), Miami (8h 9m total), Atlanta (8h 30m total), Austin (8h 30m total) and Raleigh (9h 5m total).
How far is San Juan from Houston?
1,997 mi (3,214 km) in a straight line between the cities.
How much time should I allow for the connection?
The options allow 3h. On a single ticket the carrier is responsible for the connection; on separate tickets you set the margin yourself, allowing time to collect and re-check your bags.